1 molecule converted
1 info messages 25 audit log messages
e Cuisaepy_RESP.mol2
atomtype -i Cuisaepy_RESP.mol2 -o Cuisaepy.ac -f mol2 -p gaff
WARNING: atom type of C (cc) and N (nc) may be wrong
espgen -i Cuisaepy_RESP.log -o Cuisaepy.esp
respgen -i Cuisaepy.ac -o Cuisaepy.respin1 -f resp1
respgen -i Cuisaepy.ac -o Cuisaepy.respin2 -f resp2
resp -O -i Cuisaepy.respin1 -o Cuisaepy.respout1 -e Cuisaepy.esp -t qout_stage1
resp -O -i Cuisaepy.respin2 -o Cuisaepy.respout2 -e Cuisaepy.esp -q qout_stage1 -t qout_stage2
antechamber -i Cuisaepy.ac -fi ac -o Cuisaepy.ac -fo ac -c rc -cf qout_stage2
For atom[3]:Cu, the best APS is not zero, bonds involved by this atom are frozen
Info: Bond types are assigned for valence state 3 with penalty of 2
WARNING: atom type of C13 (cc) and N2 (nc) may be wrong
prepgen -i Cuisaepy.ac -o Cuisaepy_resp.prep -f int -rn LIG -rf LIG.res
parmchk -i Cuisaepy_resp.prep -f prepi -o Cuisaepy.frcmod
Segmentation fault
cat Cuisaepy_RESP.mol2 | awk '{ sum+=$9} END {print sum}'
0.9999
# Este comando grava as cargas ESP no arquivo mol2
babel -ig09 Cuisaepy_RESP.log -omol2 Cuisaepy_RESP.mol2
atomtype -i Cuisaepy_RESP.mol2 -o Cuisaepy.ac -f mol2 -p gaff
espgen -i Cuisaepy_RESP.log -o Cuisaepy.esp
respgen -i Cuisaepy.ac -o Cuisaepy.respin1 -f resp1
respgen -i Cuisaepy.ac -o Cuisaepy.respin2 -f resp2
resp -O -i Cuisaepy.respin1 -o Cuisaepy.respout1 -e Cuisaepy.esp -t qout_stage1
resp -O -i Cuisaepy.respin2 -o Cuisaepy.respout2 -e Cuisaepy.esp -q qout_stage1 -t qout_stage2
antechamber -i Cuisaepy.ac -fi ac -o Cuisaepy_resp.ac -fo ac -c rc -cf qout_stage2
prepgen -i Cuisaepy_resp.ac -o Cuisaepy_resp.prep -f int -rn LIG -rf LIG.res
parmchk -i Cuisaepy_resp.prep -f prepi -o Cuisaepy.frcmod
cat Cuisaepy_RESP.mol2 | awk '{ sum+=$9} END {print sum}'
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